Genes for NIDDM in the HLA region on chromosome 6 - The Finland- United States Investigation of NIDDM Genetics (FUSION). EVA TUOMILEHTO-WOLF, GABI VIDGREN, STELLA NYLAND, WILLIAM A. HAGOPIAN, TIMO VALLE, KIMMO KOHTAMAKI, MICHAEL BOEHNKE, FRANCIS S. COLLINS, SOUMITRA GHOSH, JAAKKO TUOMILEHTO. To reproduce and verify that genes in the HLA region (6p21.3) play a role in conferring susceptibility not only to IDDM but also to NIDDM 97 Finnish families with at least one pair of siblings affected with NIDDM (ASP) were HLA genotyped by serology (class I loci A,C,B and class II loci DR,DQ) as part of the FUSION study. After careful clinical evaluation 11 families (11%) were excluded as probable IDDM (treated with insulin within 3 years of diagnosis, GAD positive, low C-peptide and most had two high risk IDDM associated HLA haplotypes). In the 86 NIDDM families (age of onset 35-60 years) 33 (38%) of the affected siblings shared two, 38 (44%) shared one and 15 (17%) shared no HLA haplotype (p=0.01). These 15 (7 had a mother with NIDDM) were found in families with only one ASP (total 66 families) where at least two (till four) of the parental HLA haplotypes carried a high risk for IDDM and had been seen as transmitted haplotypes (TH) in a previous population-based Finnish IDDM study. 44% (75/172) of the haplotypes seen in the 86 NIDDM probands were such TH compared to 16% (201/1247) in the Finnish background population (p<0.0001). With this study we have confirmed that HLA genes play a significant role in NIDDM.